PoplarV1, Main, Exploration, bibRecord, 004576

Identification of SnIP1, a novel protein that interacts with SNF1-related protein kinase (SnRK1).

Identifieur interne : 004576 ( Main/Exploration ); précédent : 004575; suivant : 004577

Identification of SnIP1, a novel protein that interacts with SNF1-related protein kinase (SnRK1).

Auteurs : Stephen P. Slocombe [Royaume-Uni] ; Sophie Laurie ; Laura Bertini ; Frederic Beaudoin ; J Richard Dickinson ; Nigel G. Halford

Source :

Plant molecular biology [ 0167-4412 ] ; 2002.

RBID : pubmed:12008897

Descripteurs français

English descriptors

KwdEn :
- AMP-Activated Protein Kinases (MeSH), Amino Acid Sequence (MeSH), Animals (MeSH), Base Sequence (MeSH), Carrier Proteins (genetics), Carrier Proteins (metabolism), DNA, Complementary (chemistry), DNA, Complementary (genetics), DNA, Plant (chemistry), DNA, Plant (genetics), Genetic Complementation Test (MeSH), Hordeum (genetics), Molecular Sequence Data (MeSH), Mutation (MeSH), Phylogeny (MeSH), Plant Proteins (genetics), Plant Proteins (metabolism), Protein Binding (MeSH), Protein Kinases (genetics), Protein Kinases (metabolism), Protein-Serine-Threonine Kinases (genetics), Protein-Serine-Threonine Kinases (metabolism), Rats (MeSH), Saccharomyces cerevisiae (genetics), Saccharomyces cerevisiae Proteins (MeSH), Sequence Alignment (MeSH), Sequence Analysis, DNA (MeSH), Sequence Homology, Amino Acid (MeSH), Transcription Factors (genetics), Transcription Factors (metabolism), Two-Hybrid System Techniques (MeSH).
MESH :
- chemical , chemistry : DNA, Complementary, DNA, Plant.
- chemical , genetics : Carrier Proteins, DNA, Complementary, DNA, Plant, Plant Proteins, Protein Kinases, Protein-Serine-Threonine Kinases, Transcription Factors.
- chemical , metabolism : Carrier Proteins, Plant Proteins, Protein Kinases, Protein-Serine-Threonine Kinases, Transcription Factors.
- chemical : AMP-Activated Protein Kinases, Saccharomyces cerevisiae Proteins.
- genetics : Hordeum, Saccharomyces cerevisiae.
- Amino Acid Sequence, Animals, Base Sequence, Genetic Complementation Test, Molecular Sequence Data, Mutation, Phylogeny, Protein Binding, Rats, Sequence Alignment, Sequence Analysis, DNA, Sequence Homology, Amino Acid, Two-Hybrid System Techniques.

Abstract

Plant SNF1-related protein kinase (SnRK1) phosphorylates 3-hydroxy-3-methylglutaryl-Coenzyme A, nitrate reductase and sucrose phosphate synthase in vitro, and is required for expression of sucrose synthase in potato tubers and excised leaves. In this study, a barley (Hordeum vulgare) endosperm cDNA, SnIP1, was isolated by two-hybrid screening with barley SnRK1b, a seed-specific form of SnRK1. The protein encoded by the SnIP1 cDNA was found to interact with barley SnRK1b protein in vitro. Southern analysis suggested that barley contains a single SnIP1 gene or small gene family. SnIP1 transcripts were detected in RNA isolated from leaf, root and mid-maturation seed. Sequence similarity searches against protein, nucleotide and expressed sequence tag databases identified hitherto uncharacterized sequences related to SnIP1 from maize (Zea mays, accession number AI691404), arabidopsis (Arabidopsis thaliana. AC079673 and AB016886) and poplar (Populus balsamifera, AI166543). No homologous sequences were identified from outside the plant kingdom, but weak sequence similarity was found between the SnIP1 peptide and yeast (Saccharomyces cerevisiae) SNF4 and its mammalian homologue AMPKy. Nevertheless, SnIP1 failed to complement a yeast snf4 mutant. SnIP1 was found to have little overall sequence similarity with the PV42 family of SNF4-like plant proteins, but proteins of both the SnIP1 and PV42 families contain a conserved hydrophobic sequence we named the SnIP motif.

DOI: 10.1023/a:1014464314113
PubMed: 12008897

Affiliations:

Royaume-Uni

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Le document en format XML

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<term>Amino Acid Sequence (MeSH)</term>
<term>Animals (MeSH)</term>
<term>Base Sequence (MeSH)</term>
<term>Carrier Proteins (genetics)</term>
<term>Carrier Proteins (metabolism)</term>
<term>DNA, Complementary (chemistry)</term>
<term>DNA, Complementary (genetics)</term>
<term>DNA, Plant (chemistry)</term>
<term>DNA, Plant (genetics)</term>
<term>Genetic Complementation Test (MeSH)</term>
<term>Hordeum (genetics)</term>
<term>Molecular Sequence Data (MeSH)</term>
<term>Mutation (MeSH)</term>
<term>Phylogeny (MeSH)</term>
<term>Plant Proteins (genetics)</term>
<term>Plant Proteins (metabolism)</term>
<term>Protein Binding (MeSH)</term>
<term>Protein Kinases (genetics)</term>
<term>Protein Kinases (metabolism)</term>
<term>Protein-Serine-Threonine Kinases (genetics)</term>
<term>Protein-Serine-Threonine Kinases (metabolism)</term>
<term>Rats (MeSH)</term>
<term>Saccharomyces cerevisiae (genetics)</term>
<term>Saccharomyces cerevisiae Proteins (MeSH)</term>
<term>Sequence Alignment (MeSH)</term>
<term>Sequence Analysis, DNA (MeSH)</term>
<term>Sequence Homology, Amino Acid (MeSH)</term>
<term>Transcription Factors (genetics)</term>
<term>Transcription Factors (metabolism)</term>
<term>Two-Hybrid System Techniques (MeSH)</term>
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<term>ADN complémentaire (génétique)</term>
<term>ADN des plantes (composition chimique)</term>
<term>ADN des plantes (génétique)</term>
<term>AMP-Activated Protein Kinases (MeSH)</term>
<term>Alignement de séquences (MeSH)</term>
<term>Analyse de séquence d'ADN (MeSH)</term>
<term>Animaux (MeSH)</term>
<term>Données de séquences moléculaires (MeSH)</term>
<term>Facteurs de transcription (génétique)</term>
<term>Facteurs de transcription (métabolisme)</term>
<term>Hordeum (génétique)</term>
<term>Liaison aux protéines (MeSH)</term>
<term>Mutation (MeSH)</term>
<term>Phylogenèse (MeSH)</term>
<term>Protein kinases (génétique)</term>
<term>Protein kinases (métabolisme)</term>
<term>Protein-Serine-Threonine Kinases (génétique)</term>
<term>Protein-Serine-Threonine Kinases (métabolisme)</term>
<term>Protéines de Saccharomyces cerevisiae (MeSH)</term>
<term>Protéines de transport (génétique)</term>
<term>Protéines de transport (métabolisme)</term>
<term>Protéines végétales (génétique)</term>
<term>Protéines végétales (métabolisme)</term>
<term>Rats (MeSH)</term>
<term>Saccharomyces cerevisiae (génétique)</term>
<term>Similitude de séquences d'acides aminés (MeSH)</term>
<term>Séquence d'acides aminés (MeSH)</term>
<term>Séquence nucléotidique (MeSH)</term>
<term>Techniques de double hybride (MeSH)</term>
<term>Test de complémentation (MeSH)</term>
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<keywords scheme="MESH" type="chemical" qualifier="chemistry" xml:lang="en"><term>DNA, Complementary</term>
<term>DNA, Plant</term>
</keywords>
<keywords scheme="MESH" type="chemical" qualifier="genetics" xml:lang="en"><term>Carrier Proteins</term>
<term>DNA, Complementary</term>
<term>DNA, Plant</term>
<term>Plant Proteins</term>
<term>Protein Kinases</term>
<term>Protein-Serine-Threonine Kinases</term>
<term>Transcription Factors</term>
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<term>Plant Proteins</term>
<term>Protein Kinases</term>
<term>Protein-Serine-Threonine Kinases</term>
<term>Transcription Factors</term>
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<term>Saccharomyces cerevisiae Proteins</term>
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<keywords scheme="MESH" qualifier="composition chimique" xml:lang="fr"><term>ADN complémentaire</term>
<term>ADN des plantes</term>
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<keywords scheme="MESH" qualifier="genetics" xml:lang="en"><term>Hordeum</term>
<term>Saccharomyces cerevisiae</term>
</keywords>
<keywords scheme="MESH" qualifier="génétique" xml:lang="fr"><term>ADN complémentaire</term>
<term>ADN des plantes</term>
<term>Facteurs de transcription</term>
<term>Hordeum</term>
<term>Protein kinases</term>
<term>Protein-Serine-Threonine Kinases</term>
<term>Protéines de transport</term>
<term>Protéines végétales</term>
<term>Saccharomyces cerevisiae</term>
</keywords>
<keywords scheme="MESH" qualifier="métabolisme" xml:lang="fr"><term>Facteurs de transcription</term>
<term>Protein kinases</term>
<term>Protein-Serine-Threonine Kinases</term>
<term>Protéines de transport</term>
<term>Protéines végétales</term>
</keywords>
<keywords scheme="MESH" xml:lang="en"><term>Amino Acid Sequence</term>
<term>Animals</term>
<term>Base Sequence</term>
<term>Genetic Complementation Test</term>
<term>Molecular Sequence Data</term>
<term>Mutation</term>
<term>Phylogeny</term>
<term>Protein Binding</term>
<term>Rats</term>
<term>Sequence Alignment</term>
<term>Sequence Analysis, DNA</term>
<term>Sequence Homology, Amino Acid</term>
<term>Two-Hybrid System Techniques</term>
</keywords>
<keywords scheme="MESH" xml:lang="fr"><term>AMP-Activated Protein Kinases</term>
<term>Alignement de séquences</term>
<term>Analyse de séquence d'ADN</term>
<term>Animaux</term>
<term>Données de séquences moléculaires</term>
<term>Liaison aux protéines</term>
<term>Mutation</term>
<term>Phylogenèse</term>
<term>Protéines de Saccharomyces cerevisiae</term>
<term>Rats</term>
<term>Similitude de séquences d'acides aminés</term>
<term>Séquence d'acides aminés</term>
<term>Séquence nucléotidique</term>
<term>Techniques de double hybride</term>
<term>Test de complémentation</term>
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<front><div type="abstract" xml:lang="en">Plant SNF1-related protein kinase (SnRK1) phosphorylates 3-hydroxy-3-methylglutaryl-Coenzyme A, nitrate reductase and sucrose phosphate synthase in vitro, and is required for expression of sucrose synthase in potato tubers and excised leaves. In this study, a barley (Hordeum vulgare) endosperm cDNA, SnIP1, was isolated by two-hybrid screening with barley SnRK1b, a seed-specific form of SnRK1. The protein encoded by the SnIP1 cDNA was found to interact with barley SnRK1b protein in vitro. Southern analysis suggested that barley contains a single SnIP1 gene or small gene family. SnIP1 transcripts were detected in RNA isolated from leaf, root and mid-maturation seed. Sequence similarity searches against protein, nucleotide and expressed sequence tag databases identified hitherto uncharacterized sequences related to SnIP1 from maize (Zea mays, accession number AI691404), arabidopsis (Arabidopsis thaliana. AC079673 and AB016886) and poplar (Populus balsamifera, AI166543). No homologous sequences were identified from outside the plant kingdom, but weak sequence similarity was found between the SnIP1 peptide and yeast (Saccharomyces cerevisiae) SNF4 and its mammalian homologue AMPKy. Nevertheless, SnIP1 failed to complement a yeast snf4 mutant. SnIP1 was found to have little overall sequence similarity with the PV42 family of SNF4-like plant proteins, but proteins of both the SnIP1 and PV42 families contain a conserved hydrophobic sequence we named the SnIP motif.</div>
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<Month>06</Month>
<Day>04</Day>
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<Day>22</Day>
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<Title>Plant molecular biology</Title>
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<ArticleTitle>Identification of SnIP1, a novel protein that interacts with SNF1-related protein kinase (SnRK1).</ArticleTitle>
<Pagination><MedlinePgn>31-44</MedlinePgn>
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<Abstract><AbstractText>Plant SNF1-related protein kinase (SnRK1) phosphorylates 3-hydroxy-3-methylglutaryl-Coenzyme A, nitrate reductase and sucrose phosphate synthase in vitro, and is required for expression of sucrose synthase in potato tubers and excised leaves. In this study, a barley (Hordeum vulgare) endosperm cDNA, SnIP1, was isolated by two-hybrid screening with barley SnRK1b, a seed-specific form of SnRK1. The protein encoded by the SnIP1 cDNA was found to interact with barley SnRK1b protein in vitro. Southern analysis suggested that barley contains a single SnIP1 gene or small gene family. SnIP1 transcripts were detected in RNA isolated from leaf, root and mid-maturation seed. Sequence similarity searches against protein, nucleotide and expressed sequence tag databases identified hitherto uncharacterized sequences related to SnIP1 from maize (Zea mays, accession number AI691404), arabidopsis (Arabidopsis thaliana. AC079673 and AB016886) and poplar (Populus balsamifera, AI166543). No homologous sequences were identified from outside the plant kingdom, but weak sequence similarity was found between the SnIP1 peptide and yeast (Saccharomyces cerevisiae) SNF4 and its mammalian homologue AMPKy. Nevertheless, SnIP1 failed to complement a yeast snf4 mutant. SnIP1 was found to have little overall sequence similarity with the PV42 family of SNF4-like plant proteins, but proteins of both the SnIP1 and PV42 families contain a conserved hydrophobic sequence we named the SnIP motif.</AbstractText>
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Identification of SnIP1, a novel protein that interacts with SNF1-related protein kinase (SnRK1).

Identification of SnIP1, a novel protein that interacts with SNF1-related protein kinase (SnRK1).

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